Publications

Principal Investigator: Prof. Dacheng Ren. Citation Report.
Journal Publications
At Syracuse University
76. Noreen J. Hickok, Bingyun Li, Ebru Oral, Sebastian A. J. Zaat, David A. Armbruster, Gerald J. Atkins, Antonia F. Chen, Débora C. Coraça-Huber, Tianhong Dai, Edward M. Greenfield, Rajendra Kasinath, Matthew Libera, Cláudia N. H. Marques, T. Fintan Moriarty, K. Scott Phillips, Kapil Raghuraman, Dacheng Ren, Lia Rimondini, Kordo Saeed, Thomas P. Schaer, Edward M. Schwarz, Christopher Spiegel, Paul Stoodley, Vi Khanh Truong, Shao-Ting Jerry Tsang, Britt Wildemann, Anja R. Zelmer, Annelies S. Zinkernagel. “The 2023 Orthopedic Research Society’s international consensus meeting on musculoskeletal infection: Summary from the in vitro section.” Journal of Orthopaedic Research. 2024. [Link]
75. Bendy Estime, Dacheng Ren and Radhakrishna Sureshkumar. “Tailored Fabrication of Plasmonic Film Light Filters for Enhanced Microalgal Growth and Biomass Composition.” Nanomaterials. 2024, 14(1), 44. [Link]
74. Sweta Roy, Jaime A. M. Acosta, Milandip Karak, Isabela Ramirez-Velez, Kohei Torikai, Dacheng Ren, Luiz C. A. Barbosa. “Effects of Synthetic Tetronamides and Methylated Denigrins on Bacterial Quorum Sensing and Biofilm Formation.” ACS Omega. 2023, 8, 41, 37798–37807. [Link]
73. Yikang Xu and Dacheng Ren.  “A novel inductively coupled capacitor wireless sensor system for rapid antibiotic susceptibility testing.” Journal of Biological Engineering. 2023, Aug 18;17(1):54. [Link]
72. Sang Won Lee, Erick L. Johnson, J. Alex Chediak, Hainsworth Shin, Yi Wang, K. Scott Phillips* and Dacheng Ren*.  “High-Throughput Biofilm Assay to Investigate Bacterial Interactions with Surface Topographies.” ACS Applied Bio Materials. 2022, 5, 8, 3816–3825 (2022) [Link] [Highlighted on Medicine Innovates]
71. Thais A. Moreira, Isabel V. Antolínez, Wagner O. Valença, Sweta Roy, Isabela Ramirez, Luiz C. A. Barbosa,* Dacheng Ren.* “Cadiolide Analogues and their Precursors as New Inhibitors of Bacterial Quorum Sensing and Biofilm Formation.” Bioorganic & Medicinal Chemistry Letters. Volume 57, 1, 128498. (2022) [Link]
70. Sweta Roy, Ali Adem Bahar, Huan Gu, Shikha Nangia, Karin Sauer and Dacheng Ren. “Persister Control by Leveraging Dormancy Associated Reduction of Antibiotic Efflux.” PLOS Pathogens. 17(12): e1010144 2021. (2021). [Link]
69. Jua Kim, Dacheng Ren and Jeremy L Gilbert. “Cytotoxic effect of galvanically coupled magnesium-titanium particles on Escherichia coli.” Journal of Biomedical Materials Research Part B Applied Biomaterials. 2021 Dec; 109(12):2162-2173. (2021) [Link]
68. Sang Won Lee, Joseph Carnicelli, Dariya Getya, Ivan Gitsov, K. Scott Phillips and Dacheng Ren. “Biofilm Removal by Reversible Shape Recovery of the Substrate.” ACS Applied Materials & Interfaces. 13, 15, 17174–17182. (2021) [Link]
67. Yinghui Dai, Huilin Ma, Meishan Wu, Tory Alane Welsch, Soor Rajiv Vora, Dacheng Ren and Shikha Nangia “Development of the computational antibiotic screening platform (CLASP) to aid in the discovery of new antibiotics.” Soft Matter. 2021,17, 2725-2736. (2021) [Link]
66. Sang Won Lee, K. Scott Phillips, Huan Gu, Mehdi Kazemzadeh-Narbat and Dacheng Ren. “How microbes read the map: effects of implant topography on bacterial adhesion and biofilm formation.” Biomaterials. Volume 268, 120595 (2021). [Link]
65. Huan Gu, Sweta Roy, Xiaohui Zheng, Tian Gao, Huilin Ma, Zafer Soultan, Christopher Fortner, Shikha Nangia and Dacheng Ren. “High-level antibiotic tolerance of a clinically-isolated Enterococcus faecalis strain.” Applied and Environmental Microbiology. (2020). [Link]
64. Huan Gu, Sang Won Lee, Joseph Carnicelli, Teng Zhang and Dacheng Ren. “Magnetically driven active topography for long-term biofilm control.” Nature Communications. 11,2211 (2020).  [Link]  [Behind the paper]   [Featured on @nature.research instagram
63. Hao Wang, Alex J. F. Tampio, Yikang Xu, Brian D. Nicholas and Dacheng Ren. “Noninvasive Control of Bacterial Biofilms by Wireless Electrostimulation.” ACS Biomaterials Science and Engineering. 6 (1), 727-738 (2020).  [Link]
62. Yikang Xu, Yousr Dhaouadi, Paul Stoodley, and Dacheng Ren, “Sensing the unreachable: challenges and opportunities in biofilm detection.” Current Opinion in Biotechnology. 64: 79-84 (2020). [Link]
61. Huan Gu, Sang Won Lee, Joseph Carnicelli, Zhaowei Jiang, and Dacheng Ren, “Antibiotic susceptibility of Escherichia coli cells during early-stage biofilm formation.” Journal of Bacteriology. (2019) May 6. pii: JB.00034-19. [Link]
60. Ni Wan, Hao Wang, Ng Chun Kiat, Manisha Mukherjee, Dacheng Ren, Bin Cao, Yinjie Tang. “Bacterial metabolism during biofilm growth investigated by 13C tracing.” Frontiers in Microbiology. (2018) Nov 20;9:2657. [Link]
59. Sang Won Lee, Huan Gu, James Bryan Kilberg, Dacheng Ren. “Sensitizing bacterial cells to antibiotics by shape recovery triggered biofilm dispersion.” Acta Biomaterialia.  pii: S1742-7061(18)30571-3. (2018)  [Link]
58. Fangchao Song †, Hao Wang †, Karin Sauer, Dacheng Ren. “Cyclic-di-GMP and oprF are involved in the response of Pseudomonas aeruginosa to substrate material stiffness during attachment on polydimethylsiloxane (PDMS).” Frontiers in Microbiology. 9:110 (2018). †These authors contributed equally.[Link]
57. Hao Wang, Junlin Zhou, Dacheng Ren. “Controlling Streptococcus mutants and Staphylococcus aureus Biofilms with Direct Current and Chlorhexidine.” AMB Express. 7:204 (2017). [Link]
56. M. Daben J. Libardo, Ali Adem Bahar, Buyong Ma, Riqiang Fu, Laura E. McCormick, Jun Zhao, Scott A. McCallum, Ruth Nussinov, Dacheng Ren, Alfredo M. Angeles-Boza, Myriam L. Cotton. “Nuclease Activity Gives an Edge to Host-Defense Peptide Piscidin 3 over Piscidin 1, Rendering it more Effective against Persisters and Biofilms.” FEBS Journal. 84:3662-3683 (2017).  [Link]
55. Fangchao Song, Megan E. Brasch, Hao Wang, James H. Henderson, Karin Sauer, Dacheng Ren. “How bacteria respond to material stiffness during attachment: a role of Escherichia coli flagellar motility.” ACS Applied Materials and Interfaces. 9 (27), pp 22176–22184 (2017).  [Link]
54. Yanrui Zhao, Fangchao Song, Hao Wang, Junlin Zhou, Dacheng Ren. “Phagocytosis of Escherichia coli Biofilm Cells with Different Aspect Ratios: A Role of Substratum Material Stiffness”. Applied Microbiology and Biotechnology. Volume 101, issue 16, pp 6473–6481 (2017). [Link].
53. Huan Gu, Kristopher W. Kolewe, and Dacheng Ren. “Conjugation in Escherichia coli Biofilms on Poly(dimethylsiloxane) Surfaces with Microtopographic Patterns”. Langmuir. 33 (12), pp 3142–3150 (2017). [Link].
52. Bendy Estime, Dacheng Ren, and Radhakrishna Sureshkumar. “Cultivation and energy efficient harvesting of microalgae using thermoreversible sol-gel transition”. Scientific Reports. 7: 40725 (2017). [Link].
51. Tagbo Herman Roland Niepa, Hao Wang, Jeremy L. Gilbert, and Dacheng Ren. “Eradication of Pseudomonas aeruginosa cells by cathodic electrochemical currents delivered with graphite electrodes”. Acta Biomaterialia. 50: 344-352 (2017). [Link].
50. Huan Gu, Sang Won Lee, Shelby Lois Buffington, James H. Henderson and Dacheng Ren. “On Demand Removal of Bacterial Biofilms via Shape Memory Activation”. ACS Applied Materials and Interfaces. 8: 21140-21144 (2016). [Link].
49. Huan Gu, Aaron Chen, Xinran Song, Megan E. Brasch, James H. Henderson and Dacheng Ren. “How Escherichia coli lands and forms cell clusters on a surface: a new role of surface topography”. Scientific Reports. 6: 29516 (2016). [Link].
48. Tagbo H. R. Niepa, Hao Wang, James C. Dabrowiak, Jeremy L. Gilbert, and Dacheng Ren. “Synergy between Tobramycin and Trivalent Chromium Ion in Electrochemical Control of Pseudomonas aeruginosa“. Acta Biomaterialia. 36: 286-295 (2016). [Link].
47. Geetika S. Choudhary, Xiangyu Yao, Jing Wang, Bo Peng, Rebecca A. Bader, and Dacheng Ren. “Human Granulocyte Macrophage Colony-Stimulating Factor Enhances Antibiotic Susceptibility of Pseudomonas aeruginosa Persister Cells”. Scientific Reports. 5: 17315 (2015). [Link].
46. Tagbo H. R. Niepa, Laura M. Snepenger, Hao Wang, Shiril Sivan, Jeremy L. Gilbert, Marcus B. Jones, Dacheng Ren. “Sensitizing Pseudomonas aeruginosa cells to antibiotics by electrochemical disruption of membrane functions”. Biomaterials. 74: 267-279 (2015). [Link].
45. Ali Adem Bahar, Zhigang Liu, Meagan Garafalo, Neville R Kallenbach, Dacheng Ren. “Controlling persister and biofilm cells of Gram-negative bacteria with a new 1,3,5-triazine derivative”. Pharmaceuticals. 8, 696-710 (2015). [Link].
44. Bendy Estime, Dacheng Ren, Radhakrishna Sureshkumar. “Effects of plasmonic film filters on microalgal growth and biomass composition”. Algal Research. 11: 85-89 (2015). [Link].
43. Fangchao Song, Hyun Koo, Dacheng Ren. “Effects of material properties on bacterial adhesion and biofilm formation” (invited critical review; selected for Editor’s Choice Collections). Journal of Dental Research. 94: 1027-1034 (2015)[Link].
42. Ali Adem Bahar, Zhigang Liu, Filbert Totsingan, Carlos Buitrago, Neville Kallenbach, Dacheng Ren. “Synthetic Dendrimeric Peptide Active Against Biofilm and Persister Cells of Pseudomonas aeruginosa“. Applied Microbiology and Biotechnology. 99: 8125-8135 (2015). [Link].
41. Stephen C. DeSalvo, Yating Liu, Geetika Sanjay Choudhary, Dacheng Ren, Shikha Nangia, and Radhakrishna Sureshkumar. “Signaling Factor Interactions with Polysaccharide Aggregates of Bacterial Biofilms”. Langmuir. 2015, 31 (6): 1958-1966. [Link].
40. Fangchao Song and Dacheng Ren, “Stiffness of cross-linked poly(dimethylsiloxane) affects bacterial adhesion and antibiotic susceptibility of attached cells”. Langmuir. 2014, 30 (34): 10354-10362. [Link].
 
39. Huan Gu and Dacheng Ren, “Material and surface engineering to control bacterial adhesion and biofilm formation: a review of recent advances”. Frontiers of Chemical Science & Engineering (Invited Review). 2014. [Link].
38. Ali Adem Bahar and Dacheng Ren, “Antimicrobial Peptides”. Pharmaceuticals (Invited Review). 2013, 6 (12): 1543-1575. [Link].
37. Jiachuan Pan and Dacheng Ren. “Structural effects on persister control by brominated furanones”. Bioorganic & Medicinal Chemistry Letters. 2013, 23 (24): 6559-6562. [Link].
36. Jiachuan Pan, Xin Xie, Wang Tian, Ali Adem Bahar, Nan Lin, Fangchao Song, Jing An and Dacheng Ren. “(Z)-4-bromo-5-(bromomethylene)-3-methylfuran-2(5H)-one sensitizes Escherichia coli persister cells to antibiotics”. Applied Microbiology and Biotechnology. 2013, 97 (20): 9145-9154. [Link]
35. Huan Gu, Shuyu Hou, Chanokpon Yongyat, Suzanne De Tore and Dacheng Ren.”Patterned Biofilm Formation Reveals A Mechanism for Structural Heterogeneity in Bacterial Biofilms”. Langmuir. 2013, 29 (35) 11145-11153.[Link]
34. Chen Chen, Shuyu Hou, Dacheng Ren, Mingming Ren and Qi Wang. “3-D spatial–temporal structures of biofilms in a water channel”. Mathematical Methods in the Applied Sciences. 2013, DOI: 10.1002/mma.2828.[Link]
33. Jiachuan Pan, Fangchao Song, and Dacheng Ren. “Controlling persister cells of Pseudomonas aeruginosa PDO300 by (Z)-4-bromo-5-(bromomethylene)-3-methylfuran-2(5H)-one”. Bioorganic & Medicinal Chemistry Letters. 2013, 23:4648-4651.[Link]
32. Jiachuan Pan, Ali Adem Bahar, Haseeba Syed, and Dacheng Ren. “Reverting antibiotic tolerance of Pseudomonas aeruginosa PAO1 persister cells by (Z)-4-bromo-5-(bromomethylene)-3-methylfuran-2(5H)-one”. PLoS ONE. 2012, 7(9): e45778. doi:10.1371/journal.pone.0045778. [Link]
31. Tagbo H. R.. Niepa, Jeremy L. Gilbert and Dacheng Ren. “Controlling Pseudomonas aeruginosa persister cells by weak electrochemical currents and synergistic effects with tobramycin”. Biomaterials. 2012, 33: 7356–7365. [Link]
30. Robert Szkotak, Tagbo H R Niepa, Nikhil Jawrani, Jeremy L Gilbert, Marcus B Jones and Dacheng Ren. “Differential Gene Expression to Investigate the Effects of Low-level Electrochemical Currents on Bacillus subtilis”. AMB Express. 2011, 1:39. [Link]
 
29. Xi Chen, Mi Zhang, Chunhui Zhou, Neville R. Kallenbach and Dacheng Ren, “Control of bacterial persister cells by Trp/Arg antimicrobial peptides”. Applied and Environmental Microbiology. 2011, 77(14): 4878-4885. [Link]
28. Wen-Hsuan Huang, Zhiqiang Wang, Geetika Choudhary, Beverly Guo, Jianshun Zhang and Dacheng Ren*, “Characterization of Microbial Species in a Regenerative Bio-filter System for VOC Removal”. 2011. HVAC&R Research. Accepted.
27. Shuyu Hou†, Huan Gu†, Cassandra Smith and Dacheng Ren, “Microtopographic patterns affect Escherichia coli biofilm formation on polydimethylsiloxane surfaces”. Langmuir. 2011, 27(6): 2686-2691. †These authors contributed equally. [Link]
26. Jensen Zhang, Zhiqiang Wang and Dacheng Ren, “Botanical Air Filtration for Improving IAQ: Myths and Facts.” ASHRAE Journal. 2010, Dec.:138-140
25. Shuyu Hou, Zhigang Liu, Anne Young, Sheron Mark,  Neville Kallenbach and Dacheng Ren,  “Structural effects on inhibition of planktonic growth and biofilm formation of Escherichia coli by Trp/Arg containing antimicrobial peptides.” Applied and Environmental Microbiology. 2010,76(6): 1967-1974.[Link]
24. Marcus B. Jones, Scott N. Peterson, Rosslyn Benn, John C. Braisted, Behnam Jarrahi, Kenneth Shatzkes, Dacheng Ren, Thomas K. Wood and Martin J. Blaser, “Role of luxS in Bacillus anthracis growth and virulence factor expression”. Virulence. 2010, 1(2): 72-83. [Link]
23. Tianzhu Zang, Bobby W.K. Lee, Lisa M. Cannon, Kathryn A. Ritter, Shujia Dai, Dacheng Ren, Thomas K. Wood, and Zhaohui Sunny Zhou, “A Naturally Occurring Brominated Furanone Covalently Modifies and Inactivates LuxS”. Bioorganic & Medicinal Chemistry Letters. 2009, 19(21):6200-6204.[Link]
22. Shuyu Hou, Chunhui Zhou, Zhigang Liu, Anne W. Young, Zhengshuang Shi, Dacheng Ren and Neville R. Kallenbach, “Antimicrobial dendrimer active against Escherichia coli biofilms”. Bioorganic & Medicinal Chemistry Letters. 2009, 19(18): 5478-5481. [Link]
21. Jiachuan Pan and Dacheng Ren, “Quorum sensing inhibitors: a patent overview”. Expert Opinion On Therapeutic Patents (Invited Review). 2009, 19(11):1581-1601. [Link]
20. Miao Duo, Mi Zhang, Yan-Yeung Luk and Dacheng Ren, “Inhibition of Candida albicans Growth by Brominated Furanones”. Applied Microbiology and Biotechnology. 2009, 84(6):1551-1563. [Link]
19. Jian Wu†, Shuyu Hou†, Dacheng Ren and Patrick T. Mather, “Antimicrobial Properties of Nanostructured Hydrogel Webs Containing Silver”. Biomacromolecules. 2009(10): 2686-2693. †These authors contributed equally. [Link]
18. Shuyu Hou, Erik A. Button, Ricky Lei Wu, Yan-Yeung Luk and Dacheng Ren, “Prolonged Control of Patterned Biofilm Formation by Bio-inert Surface Chemistry”. Chemical Communication. 2009: 1207-1209.[Link]
17. Erik A. Burton, Karen A. Simon, Shuyu Hou, Dacheng Ren, and Yan-Yeung Luk, “Molecular Gradients of Bio-inertness Reveal Mechanistic Difference between Mammalian Cell Adhesion and Bacterial Biofilm Formation”. Langmuir. 2009, 25(3): 1547-1553.[Link]
16. Miao Duo, Shuyu Hou, and Dacheng Ren, “Identifying Escherichia coli genes involved in intrinsic multidrug resistance” Applied Microbiology and Biotechnology. 2008, 81(4): 731-741.[Link]
15. Yongbin Han, Shuyu Hou, Karen A. Simon, Dacheng Ren, and Yan-Yeung Luk “Identifying the important structural elements of brominated furanones for inhibiting biofilm formation by Escherichia coliBioorganic & Medicinal Chemistry Letters. 2008,  18: 1006-1010. [Link]
14. Shuyu Hou, Erik A. Burton, Karen A. Simon, Dustin Blodgett, Yan-Yeung Luk, Dacheng Ren, “Inhibiting Escherichia coli Biofilm Formation by Self-Assembled Monolayers of Functional Alkanethiols on Gold.” Applied and Environmental Microbiology. 2007, 73: 4300-4307. [Link]
Previously

13. Andres Gonzalez, Rongju Zuo, Dacheng Ren, and T. K. Wood, “Hha, YbaJ, and OmpA Regulate Escherichia coli K12 Biofilm Formation and Conjugation Plasmids Abolish Motility,” Biotechnology and Bioengineering.,93: 188-200, (2006). [Link]

12. Jinpian Diao, Dacheng Ren, James R. Engstrom, and Kelvin H. Lee “A Surface Modification Strategy on Silicon Nitride for Developing Biosensors Made of Giant Magnetoresistive Materials”. Analytical Biochemistry, 343: 322-328 (2005) [Link]

11.    Dacheng Ren, Rongjun Zuo, Laura A. Bedzyk, Rick W. Ye, Gary Eldridge, Mark Pasmore, and Thomas K. Wood “Differential Gene Expression to Investigate Escherichia coli Biofilm Inhibition by Plant Extract Ursolic Acid”. Applied and Environmental Microbiology, 71: 4022-4034 (2005). [Link]

10. Marcus B. Jones, Rachana Jani, Dacheng Ren, Thomas K. Wood, and Martin J. Blaser “Inhibition of Bacillus anthracis growth and virulence gene expression by inhibitors of quorum-sensing”. Journal of Infectious Diseases, 191: 1881-1888 (2005). [Link]

9. Dacheng Ren, Rongjun Zuo, and Thomas K. Wood “Quorum-Sensing Antagonist (5Z)-4-Bromo-5-(bromomethylene)-3-butyl-2(5H)-furanone Influences Siderophore Biosynthesis in Pseudomonas putida and Pseudomonas aeruginosa“. Applied Microbiology and Biotechnology, 66(6): 689-695 (2005). [Link]

8. Dacheng Ren and Thomas K. Wood “(5Z)-4-Bromo-5-(Bromomethylene)-3-butyl-2(5H)-furanone Reduces Corrosion from Desulfotomaculum orientis“. Environmental Microbiology, 6(5): 535-540 (2004). [Link]

7. Dacheng Ren, Laura A. Bedzyk, Rick W. Ye, Stuart M. Thomas, and Thomas K. Wood “Stationary-Phase Signals Affect Autoinducer-2 and Gene Expression in Escherichia coli“. Applied and Environmental Microbiology, 70(4): 2038-2043 (2004). [Link]

6. Dacheng Ren, Laura A. Bedzyk, Peter Setlow, Dacre F. England, Staffan Kjelleberg, Stuart M. Thomas, Rick W. Ye, and Thomas K. Wood “Differential Gene Expression to Investigate the Effect of (5Z)-4-Bromo-5-(bromomethylene)-3-butyl-2(5H)-furanone on Bacillus subtilis“. Applied and Environmental Microbiology, 70(8): 4941-4949 (2004).[Link]

5. Dacheng Ren, Laura A. Bedzyk, Rick Ye, Stuart M. Thomas, and Thomas K. Wood “Differential gene expression shows natural brominated furanones interfere with the autoinducer-2 bacterial signaling system of Escherichia coli“. Biotechnology and Bioengineering, 88(5):630-642 (2004). [Link]

4. Dacheng Ren, Laura A. Bedzyk, Rick Ye, Stuart M. Thomas, and Thomas K. Wood “Gene Expression in Escherichia coli Biofilms”. Applied Microbiology and Biotechnology, 64(4):515-524 (2004). [Link]

3. Dacheng Ren, Laura A. Bedzyk, Peter Setlow, Stuart M. Thomas, Rick W. Ye, and Thomas K. Wood “Gene Expression in Bacillus subtilis Surface Biofilms with and without Sporulation and the Importance of yveR for Biofilm Maintenance”. Biotechnology and Bioengineering, 86(3): 344-364 (2004). [Link]

2. Dacheng Ren, James J. Sims, and Thomas K. Wood. Inhibition of Biofilm Formation and Swarming of Bacillus subtilis by (5Z)-4-Bromo-5-(bromomethylene)-3-butyl-2(5H)-furanone. Letters in Applied Microbiology, 34: 293-299 (2002). [Link]

1. Dacheng Ren, James J. Sims, and Thomas K. Wood. Inhibition of Biofilm Formation and Swarming of Escherichia coli by (5Z)-4-Bromo-5-(bromomethylene)-3-butyl-2(5H)-furanone. Environmental Microbiology, 3(11): 731-736 (2001). [Link]

Comments are closed.